Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018507: Candidatus Portiera aleyrodidarum BT-B chromosome, complete genome

NCBI: NC_018507

Host Lineage: Portiera aleyrodidarum; Portiera; Halomonadaceae; Oceanospirillales; Proteobacteria; Bacteria

General Information: Obligate endosymbiont of the whitefly Bemisia tabaci.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
179686*11259932914Island text4.0978217.896333.4033Neighbours21BLASTN+79686.gbk
2115346*14209926754Island text2.6703818.153731.7828Neighbours21BLASTN115346.gbk
3339000*36299924000Island text1.6567716.584132.6323Neighbours21BLASTN+339000.gbk