Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_018012: Thiocystis violascens DSM 198 chromosome, complete genome

NCBI: NC_018012

Host Lineage: Thiocystis violascens; Thiocystis; Chromatiaceae; Chromatiales; Proteobacteria; Bacteria

General Information: Isolation: Brackish pond; Temp: Mesophile. Principally a freshwater bacteria, although strain DSM 198 was isolated from brackish water.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112179314968927897Island text2.6124935.678131.2557Neighbours11BLASTN+IslandViewer 121793.gbk
259872462559926876Island text1.9064532.330429.8658Neighbours11BLASTN+598724.gbk
31076839*110244725609Island text1.617725.175719.4725Neighbours11BLASTN+1076839.gbk
41274500*129933624837Island text1.543924.62117.5509Neighbours11BLASTN+IslandViewer 1274500.gbk
51326553136749040938Island text4.0235244.842226.2186Neighbours11BLASTN+IslandViewer 1326553.gbk
61628364165096122598Island text1.8583825.769727.5777Neighbours11BLASTN+IslandViewer 1628364.gbk
71789028181410225075Island text1.8380930.602931.2192Neighbours11BLASTN+1789028.gbk
81935500195972624227Island text1.8079228.128328.6127Neighbours11BLASTN+1935500.gbk
92159814217989620083Island text1.967927.458727.5582Neighbours11BLASTNIslandViewer 2159814.gbk
102327376235351326138Island text1.512323.824632.2248Neighbours11BLASTN+IslandViewer 2327376.gbk
113102215*312901726803Island text1.4841224.203621.8175Neighbours11BLASTN+3102215.gbk
123300000332351723518Island text1.7200627.020323.5071Neighbours11BLASTN+IslandViewer 3300000.gbk
133401854342874126888Island text1.8518327.413225.5356Neighbours11BLASTN+3401854.gbk
144054000407226418265Island text1.5010927.583929.8514Neighbours11BLASTN+4054000.gbk
154184500*420609921600Island text1.6846727.204119.667Neighbours11BLASTN+IslandViewer 4184500.gbk
164221612424428922678Island text1.4982726.744921.047Neighbours11BLASTN+4221612.gbk