Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017955: Modestobacter marinus, complete genome

NCBI: NC_017955

Host Lineage: Modestobacter marinus; Modestobacter; Geodermatophilaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from a white marble surface in Carrara, Tuscany, Italy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
134393136381919889Island text5.1340117.809722.95Neighbours11BLASTN+IslandViewer 343931.gbk
247992949986119933Island text2.5258511.144210.5326Neighbours11BLASTN479929.gbk
3693303*72009926797Island text1.536610.964910.6225Neighbours11BLASTN+IslandViewer 693303.gbk
41506221*152653820318Island text2.5206314.844810.3095Neighbours11BLASTN+IslandViewer 1506221.gbk
51555990157596019971Island text1.4945810.97411.7371Neighbours11BLASTNIslandViewer 1555990.gbk
61584269160697722709Island text2.0449811.35611.1634Neighbours11BLASTN+IslandViewer 1584269.gbk
71611037164427233236Island text1.5788112.92810.5397Neighbours11BLASTN+IslandViewer 1611037.gbk
81667500*169121123712Island text1.5810810.274810.1109Neighbours11BLASTNIslandViewer 1667500.gbk
92327500*235057523076Island text2.8198212.879612.8522Neighbours11BLASTN+IslandViewer 2327500.gbk
102494640*254473850099Island text2.7859912.634911.647Neighbours11BLASTN+IslandViewer 2494640.gbk
113006500302579719298Island text2.2495713.323210.229Neighbours11BLASTN+3006500.gbk
123057592310314645555Island text1.5515711.62577.08217Neighbours11BLASTNIslandViewer 3057592.gbk
133545626*358359937974Island text2.7088413.570613.1924Neighbours11BLASTN+IslandViewer 3545626.gbk
143670670*373222661557Island text4.1099417.337122.297Neighbours11BLASTNIslandViewer 3670670.gbk
153731480*3851739120260Island text1.7482710.91446.52984Neighbours11BLASTN+IslandViewer 3731480.gbk
164075804410265026847Island text2.9622316.183913.9313Neighbours11BLASTN+IslandViewer 4075804.gbk
174746441476797821538Island text1.8991111.58079.04245Neighbours11BLASTN+IslandViewer 4746441.gbk
184888990*492348734498Island text1.618349.925229.19722Neighbours8BLASTN+4888990.gbk