Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017954: Thermogladius cellulolyticus 1633 chromosome, complete genome

NCBI: NC_017954

Host Lineage: Thermogladius cellulolyticus; Thermogladius; Desulfurococcaceae; Desulfurococcales; Crenarchaeota; Archaea

General Information: Obligate anaerobe. Grows optimally at a temperature of 84 deg C and pH 7.1, isolated from the hot spring in the Uzon Caldera in Kamchatka (Russia). Capable of growing by fermentation not only on proteinaceous substrates but also on cellulose. Elemental sulfur is not obligately required but stimulates growth and is reduced to H2S.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111750617506Island text1.531232.049542.1032+1.gbk
216178719592934143Island text2.2330747.991139.571BLASTN+161787.gbk
3301562*32842926868Island text1.8958735.893154.4572BLASTN301562.gbk
4345430*38693741508Island text1.8457133.66846.873BLASTN345430.gbk
5471000*49194520946Island text1.8061534.099830.9555BLASTN471000.gbk
693461697817643561Island text1.5657231.629653.283Neighbours9BLASTN+934616.gbk