Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017904: Mycobacterium sp. MOTT36Y chromosome, complete genome

NCBI: NC_017904

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Location: South Korea; Host: Human; Source: sputa. Clinical isolates from Korean patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1666285*69128224998Island text1.8284316.783619.423Neighbours11BLASTN+IslandViewer 666285.gbk
21683471171359930129Island text3.1381221.499526.2083Neighbours11BLASTN+IslandViewer 1683471.gbk
31725180175144426265Island text1.9969617.999321.1077Neighbours11BLASTN+IslandViewer 1725180.gbk
41763015179110928095Island text1.5735616.469712.1333Neighbours11BLASTN+IslandViewer 1763015.gbk
51831071186631935249Island text1.632217.093623.6189Neighbours11BLASTN+IslandViewer 1831071.gbk
61896322191969023369Island text1.5496216.095716.5726Neighbours11BLASTNIslandViewer 1896322.gbk
72162045*219358231538Island text1.4939718.972917.1316Neighbours11BLASTN+IslandViewer 2162045.gbk
82353800237759923800Island text2.3854223.05725.2727Neighbours11BLASTN+IslandViewer 2353800.gbk
92379387*244255963173Island text1.8259915.454822.0359Neighbours11BLASTN+IslandViewer 2379387.gbk
102641270*266609924830Island text1.8896916.988217.8929Neighbours11BLASTN+IslandViewer 2641270.gbk
112724941275549930559Island text1.4271715.722313.1685Neighbours11BLASTN+IslandViewer 2724941.gbk
123084872*310786422993Island text1.9702120.213217.93Neighbours11BLASTN+IslandViewer 3084872.gbk
133113000313393020931Island text1.4849314.784614.3408Neighbours11BLASTN+IslandViewer 3113000.gbk
143415700345852742828Island text1.5908517.270617.2839Neighbours11BLASTN+IslandViewer 3415700.gbk
154203257422738024124Island text2.2735820.045616.4599Neighbours11BLASTN+4203257.gbk
164742775478553342759Island text1.3712816.293815.3916Neighbours11BLASTN+IslandViewer 4742775.gbk
175543490556189318404Island text1.526414.351415.6642Neighbours11BLASTN5543490.gbk