Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017519: Mycoplasma hyorhinis MCLD chromosome, complete genome

NCBI: NC_017519

Host Lineage: Mycoplasma hyorhinis; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: Infection with mycoplasma is a common problem in cell cultures, with Mycoplasma hyorhinis being the predominant species. Mycoplasma hyorhinis strain MCLD was isolated from the melanoma cell line LB33 mel A1.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
137158*6010422947Island text1.9943711.228114.7582Neighbours21BLASTN37158.gbk
226400028844024441Island text1.5430411.869718.5548Neighbours21BLASTN264000.gbk
3390610*41409923490Island text1.499113.405921.312Neighbours21BLASTN390610.gbk
448897151299024020Island text2.1464314.341620.8022Neighbours21BLASTN488971.gbk
5672462*69389221431Island text1.507612.360218.1264Neighbours21BLASTN672462.gbk
6805643*83199926357Island text1.5901214.147622.8756Neighbours21BLASTN805643.gbk