Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017353: Staphylococcus lugdunensis N920143, complete genome

NCBI: NC_017353

Host Lineage: Staphylococcus lugdunensis; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylococcus lugdunensis is known to be a pathogenic member of the coagulase-negative staphylococci, causing skin and soft tissue infections, catheter-related bacteremia, native valve endocardititis and osteomyelitis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18891811395925042Island text1.8977320.80532.0867Neighbours21BLASTN+88918.gbk
215215117609923949Island text1.4197618.7524.6802Neighbours21BLASTN+152151.gbk
336135039318131832Island text1.9966323.262841.8387Neighbours21BLASTN361350.gbk
450593552809922165Island text1.609624.692438.2751Neighbours325BLASTN+505935.gbk
564619566623620042Island text1.5278418.857430.229Neighbours21BLASTN+646195.gbk
6825856*84815622301Island text1.693119.885634.4485Neighbours325BLASTN+825856.gbk
788758190744519865Island text2.2845419.570837.5228Neighbours21BLASTN+887581.gbk
81235095125809923005Island text4.0658725.446139.4506Neighbours21BLASTN1235095.gbk
91699652*172209922448Island text3.5322125.135738.7806Neighbours21BLASTN1699652.gbk
101750971177009919129Island text2.8749428.541541.8978Neighbours21BLASTN1750971.gbk
112129738*217083041093Island text1.7358918.023530.2168Neighbours21BLASTN2129738.gbk
122353665237669823034Island text1.7573117.172332.5557Neighbours21BLASTN2353665.gbk