Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017317: Corynebacterium ulcerans 809 chromosome, complete genome

NCBI: NC_017317

Host Lineage: Corynebacterium ulcerans; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. Corynebacterium ulcerans is commonly associated with dairy animals and unpasturized dairy products. This organism has been implicated in bovine mastitis and can cause skin infections and a diptheria-like disease in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
151428*7009918672Island text1.633533.809626.6902BLASTN+51428.gbk
213467115896724297Island text1.5196436.806945.8582Neighbours17BLASTN134671.gbk
324615527183425680Island text1.6790446.267835.6484Neighbours17BLASTN246155.gbk
4944218*96409919882Island text1.5096637.007544.3142Neighbours17BLASTN944218.gbk
51143378*116433720960Island text1.7353433.531450.7667Neighbours17BLASTN+1143378.gbk
61173619*119209918481Island text1.5420432.257236.1737Neighbours17BLASTN1173619.gbk
71291294131434923056Island text2.1581334.803657.3121BLASTN+1291294.gbk
81463466148253219067Island text1.503733.323239.3531Neighbours17BLASTN1463466.gbk
91598925162409925175Island text1.5063932.742649.665Neighbours17BLASTN1598925.gbk
102149794217338423591Island text1.4994934.025454.7174Neighbours17BLASTN2149794.gbk
112181284222877447491Island text1.4483434.855336.3077Neighbours17BLASTN2181284.gbk