Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017305: Corynebacterium pseudotuberculosis PAT10 chromosome, complete

NCBI: NC_017305

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1863072*88962226551Island text1.5955438.197744.3274Neighbours17BLASTN+863072.gbk
21037133*107194234810Island text1.6192836.468645.1876Neighbours17BLASTN+1037133.gbk
31258840*128363824799Island text1.617838.537447.6467Neighbours17BLASTN1258840.gbk
41295321*131385218532Island text1.5018837.706752.1135Neighbours17BLASTN1295321.gbk
51326351*134418917839Island text1.5274735.414633.6947BLASTN1326351.gbk
62034207*206118026974Island text1.7574739.248552.3669Neighbours17BLASTN+2034207.gbk