Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017303: Corynebacterium pseudotuberculosis I19 chromosome, complete genome

NCBI: NC_017303

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1863060*88961326554Island text1.5938738.114844.5544Neighbours17BLASTN+863060.gbk
21039562*107437134810Island text1.6125536.351846.6536Neighbours17BLASTN+1039562.gbk
31172656119118718532Island text1.4901836.466428.1581Neighbours17BLASTN+1172656.gbk
41261311*128610924799Island text1.5961237.520647.1012Neighbours17BLASTN1261311.gbk
51297793*132203024238Island text1.6521836.926550.6539Neighbours17BLASTN1297793.gbk
61328777*134661917843Island text1.5378635.876733.9323BLASTN1328777.gbk
71361706*138009518390Island text1.490136.594142.965Neighbours17BLASTN+1361706.gbk
81420758*143959918842Island text1.5305935.147146.9728Neighbours17BLASTN1420758.gbk
91454841147809923259Island text1.4718135.524147.7037Neighbours17BLASTN1454841.gbk
101836500*185838621887Island text1.7900139.236851.6141BLASTN+1836500.gbk
112036500*206359027091Island text1.7995643.520440.7231Neighbours17BLASTN+2036500.gbk