Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017301: Corynebacterium pseudotuberculosis C231 chromosome, complete

NCBI: NC_017301

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1863500*88941725918Island text1.8196835.660955.899Neighbours17BLASTN+863500.gbk
21037519*107417036652Island text1.6740838.568144.4906Neighbours17BLASTN+1037519.gbk
31172660119110918450Island text1.5891636.273446.1944Neighbours17BLASTN+1172660.gbk
41261167*128596624800Island text1.4947337.287225.332Neighbours17BLASTN1261167.gbk
51297649*131739419746Island text1.6097937.419947.0353Neighbours17BLASTN1297649.gbk
61328500*134824819749Island text1.5820936.995452.0514Neighbours17BLASTN1328500.gbk
71360565*137998519421Island text1.5317836.085436.2306Neighbours17BLASTN+1360565.gbk
81425293*144472919437Island text1.5237736.426940.6383Neighbours17BLASTN1425293.gbk
92025978*206542739450Island text1.5536636.691456.1152Neighbours17BLASTN+2025978.gbk