Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017300: Corynebacterium pseudotuberculosis 1002 chromosome, complete

NCBI: NC_017300

Host Lineage: Corynebacterium pseudotuberculosis; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This disease is found in all the world's major sheep and goat production areas, causing significant economic losses worldwide, mainly due to the reduction of wool, meat and milk yields, decreased reproductive efficiencies of affected animals and condemnation of carcasses and skins in abattoirs. In some cases, the infection produces few obvious clinical signs in the animal, remaining unrecognized until a post-mortem examination has been carried out and, making it difficult to obtain definitive data about prevalence of the disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1863898*88620222305Island text1.5780139.550241.8491Neighbours17BLASTN+863898.gbk
21045555*107009924545Island text1.6086237.036647.0247Neighbours17BLASTN+1045555.gbk
31258861*128366024800Island text1.6074737.906445.2248Neighbours17BLASTN1258861.gbk
41295344*131451719174Island text1.5939737.936253.1216Neighbours17BLASTN1295344.gbk
51326331*134417217842Island text1.5417335.280932.0015BLASTN1326331.gbk
61358260*137691818659Island text1.5153136.405646.2054Neighbours17BLASTN+1358260.gbk
71426975*144489317919Island text1.5478334.973949.0681Neighbours17BLASTN+1426975.gbk
81833772*185588222111Island text1.7514438.64451.5278BLASTN+1833772.gbk
92034000*206159727598Island text2.0623546.793343.2127Neighbours17BLASTN+2034000.gbk