Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017294: Candidatus Arthromitus sp. SFB-mouse-Yit, complete genome

NCBI: NC_017294

Host Lineage: Arthromitus; Arthromitus; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Candidatus Arthromitus sp. isolated from BALB/c mouse. Segmented filamentous bacteria isolated from mouse.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1714949506423571Island text5.8412523.293141.6172Neighbours21BLASTN71494.gbk
211550014109925600Island text2.7343218.342737.2762Neighbours21BLASTN+115500.gbk
3327433*34632818896Island text3.8943418.555432.3547Neighbours21BLASTN+327433.gbk
4403422*42347220051Island text2.4124521.342240.8229Neighbours21BLASTN+403422.gbk
5758992*77873819747Island text4.262924.432142.9921Neighbours21BLASTN758992.gbk
61060684108104020357Island text3.0578318.397433.9079Neighbours21BLASTN1060684.gbk
71096000111443618437Island text2.1746618.512933.4267Neighbours21BLASTN1096000.gbk
81385576140733221757Island text2.7672618.287933.6765Neighbours21BLASTN+1385576.gbk
91457262*149473537474Island text2.4465218.98136.5666Neighbours21BLASTN1457262.gbk