Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017291: Chlamydophila psittaci C19/98 chromosome, complete genome

NCBI: NC_017291

Host Lineage: Chlamydia psittaci; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: This organism was previously called Rickettsia psittaci, Chlamydia psittaci or Ehrlichia psittaci. Usually these type of human infections occur when in close contact with infected birds (poultry workers, pet owners), although instances of person to person transmission have been found.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1269297*29375624460Island text1.6224222.911741.5698Neighbours314BLASTN+269297.gbk
271326573216418900Island text1.530522.809340.2444Neighbours314BLASTN+713265.gbk
3829577*85215422578Island text1.4711321.978445.4197Neighbours314BLASTN829577.gbk
41093946*111434920404Island text1.7861324.6237.9029Neighbours314BLASTN1093946.gbk