Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017281: Campylobacter jejuni subsp. jejuni S3 chromosome, complete genome

NCBI: NC_017281

Host Lineage: Campylobacter jejuni; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This organism is the leading cause of bacterial food poisoning (campylobacteriosis) in the world, and is more prevalent than Salmonella enteritis (salmonellosis). Found throughout nature, it can colonize the intestines of both mammals and birds, and transmission to humans occurs via contaminated food products. This organism can invade the epithelial layer by first attaching to epithelial cells, then penetrating through them. Systemic infections can also occur causing more severe illnesses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130261*5359323333Island text2.1720617.450530.3436Neighbours21BLASTN30261.gbk
2388610*41017221563Island text2.1921418.1926.6072Neighbours21BLASTN+388610.gbk
3433995*45703823044Island text1.3671114.792125.2345Neighbours21BLASTN+433995.gbk
4722000*74687024871Island text2.1535119.354332.3767Neighbours21BLASTN+722000.gbk
51253905127300619102Island text1.520414.822525.6974BLASTN+1253905.gbk
61403000142159918600Island text1.553214.656324.4589Neighbours21BLASTN1403000.gbk
71533454155921725764Island text1.5047116.482227.951Neighbours21BLASTN+1533454.gbk
81645903*167626630364Island text1.8216217.283329.9667Neighbours21BLASTN1645903.gbk