Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017280: Campylobacter jejuni subsp. jejuni M1 chromosome, complete genome

NCBI: NC_017280

Host Lineage: Campylobacter jejuni; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This organism is the leading cause of bacterial food poisoning (campylobacteriosis) in the world, and is more prevalent than Salmonella enteritis (salmonellosis). Found throughout nature, it can colonize the intestines of both mammals and birds, and transmission to humans occurs via contaminated food products. This organism can invade the epithelial layer by first attaching to epithelial cells, then penetrating through them. Systemic infections can also occur causing more severe illnesses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
130388*5851628129Island text2.179518.589131.7863Neighbours21BLASTN30388.gbk
2387760*40927921520Island text2.1533518.379827.3808Neighbours21BLASTN+387760.gbk
3435347*45750322157Island text1.5544314.948426.5658Neighbours21BLASTN435347.gbk
4689067*71515326087Island text2.3922920.879732.6804Neighbours21BLASTN689067.gbk
51075435109692621492Island text2.3233214.481114.9054Neighbours21BLASTN+1075435.gbk
61467252148559918348Island text1.5697413.809226.2547Neighbours21BLASTN1467252.gbk
71584961*161087325913Island text1.736817.488431.6345Neighbours21BLASTN1584961.gbk