Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017279: Campylobacter jejuni subsp. jejuni IA3902 chromosome, complete

NCBI: NC_017279

Host Lineage: Campylobacter jejuni; Campylobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This organism is the leading cause of bacterial food poisoning (campylobacteriosis) in the world, and is more prevalent than Salmonella enteritis (salmonellosis). Found throughout nature, it can colonize the intestines of both mammals and birds, and transmission to humans occurs via contaminated food products. This organism can invade the epithelial layer by first attaching to epithelial cells, then penetrating through them. Systemic infections can also occur causing more severe illnesses.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
129737*5555425818Island text2.1804618.32931.3957Neighbours21BLASTN+29737.gbk
2393255*41433321079Island text2.1079817.39527.0096Neighbours21BLASTN+393255.gbk
3437665*46011022446Island text1.3954415.874326.3309Neighbours21BLASTN+437665.gbk
4692500*71764425145Island text2.1975619.094129.4969Neighbours21BLASTN+692500.gbk
51355441137839122951Island text1.7338114.447719.5118Neighbours21BLASTN1355441.gbk
61489397150719017794Island text1.4802915.199427.8231Neighbours21BLASTN1489397.gbk
71603916*163426430349Island text1.8028317.065530.3283Neighbours21BLASTN+1603916.gbk