Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017278: Thermus sp. CCB_US3_UF1 chromosome, complete genome

NCBI: NC_017278

Host Lineage: Thermus; Thermus; Thermaceae; Thermales; Deinococcus-Thermus; Bacteria

General Information: Aerobic, thermophilic bacteria. Isolated from a hot spring in Ulu Slim, Perak, Malaysia, at 92.4 deg C, pH 7. Thiosulfate oxidation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
148630*8030931680Island text1.8869418.643911.7683Neighbours11BLASTN48630.gbk
2258921*29355734637Island text2.2811325.328723.07Neighbours11BLASTN+258921.gbk
31720371174319722827Island text1.6222217.250316.424Neighbours11BLASTN+1720371.gbk
41873934*189609922166Island text1.7906219.074715.3112Neighbours11BLASTN+1873934.gbk