Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017277: Synechocystis sp. PCC 6803, complete genome

NCBI: NC_017277

Host Lineage: Synechocystis; Synechocystis; ; Chroococcales; Cyanobacteria; Bacteria

General Information: Photosynthesis. Synechocystis is a genus of cyanobacteria primarily represented by the strain Synechocystis sp. PCC6803. S. sp. PCC6803 lives in freshwater and is capable of both phototrophic growth by oxygenic photosynthesis in sunlight and heterotrophic growth by glycolysis and oxidative phosphorylation during dark periods. It is able to effectively anticipate transitions of light and dark phases by using a circadian clock.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1159374236326427Island text2.0337331.05220.411Neighbours311BLASTN+15937.gbk
29632511769321369Island text1.7577626.443920.3192Neighbours311BLASTN96325.gbk
3240863*26409923237Island text1.5314227.462312.5594Neighbours311BLASTN240863.gbk
435226339172939467Island text2.7034235.971119.8903Neighbours21BLASTN+352263.gbk
51192485121496822484Island text1.6456627.358915.2741Neighbours311BLASTN1192485.gbk
61283477*130816524689Island text1.6342330.160921.7218Neighbours311BLASTN1283477.gbk
71362082138070718626Island text1.4902725.334423.5717Neighbours329BLASTN1362082.gbk
81610391*162925118861Island text1.6146524.928636.5432Neighbours21BLASTN+1610391.gbk
91717637*174119223556Island text1.9985828.594819.5054Neighbours311BLASTN+1717637.gbk
101957399198028822890Island text1.4913224.446722.3109Neighbours311BLASTN+1957399.gbk
112039097*206462525529Island text1.425125.103424.394Neighbours311BLASTN+2039097.gbk
122746421276758321163Island text1.5622429.644531.8693Neighbours311BLASTN2746421.gbk
132776264*280214825885Island text1.5051626.931313.6436Neighbours311BLASTN+2776264.gbk
143083494311262029127Island text1.824629.201519.8977Neighbours311BLASTN+3083494.gbk
153434162345888324722Island text1.8097130.251523.992Neighbours311BLASTN3434162.gbk
163475500349822122722Island text1.7318828.811520.7957Neighbours311BLASTN3475500.gbk