Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017275: Sulfolobus islandicus HVE10/4 chromosome, complete genome

NCBI: NC_017275

Host Lineage: Sulfolobus islandicus; Sulfolobus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Sulfolobus islandicus is a thermo-acidophilic archeae commonly identified in hot, acidic sulfur springs. This organism can grow both chemoautotrophically, using sulfur or hydrogen sulfide, and heterotrophically. S. islandicus can play host to a number of plasmids and viruses which may be useful in developing tools for genetic analysis. In addition, Sulfolobus islandicus isolates from different areas in Russia, Iceland, and the USA have been shown to be genetically distinct from each other making this organism useful for comparative analysis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
134200036483922840Island text1.6375725.243238.5918Neighbours323BLASTN342000.gbk
237780040009922300Island text2.0316917.187536.0397Neighbours21BLASTN377800.gbk
356872259180323082Island text1.7977322.942826.3479Neighbours21BLASTN+568722.gbk
459495161659921649Island text1.7280119.88329.213Neighbours21BLASTN594951.gbk
569885472559926746Island text2.3899518.36932.9455Neighbours323BLASTN+698854.gbk
6927814*94940421591Island text1.7861419.708930.2909Neighbours323BLASTN+927814.gbk
7985516100409918584Island text1.7543718.546329.5042Neighbours21BLASTN+985516.gbk
81189162*122232833167Island text2.4924435.775534.7652Neighbours21BLASTN1189162.gbk
91248875*127478025906Island text2.3699518.061134.4161Neighbours21BLASTN1248875.gbk
101335763*136622530463Island text1.9474218.762232.3486Neighbours21BLASTN1335763.gbk
111436875*147631939445Island text2.3909619.453735.5946Neighbours21BLASTN1436875.gbk
121486526*150972123196Island text2.4106616.902933.9718Neighbours21BLASTN+1486526.gbk
131635959*166425928301Island text2.6965120.91938.2803Neighbours323BLASTN+1635959.gbk
141669587*168975220166Island text1.9052121.067834.7395Neighbours21BLASTN+1669587.gbk
151705827*172914123315Island text3.2439318.730228.4728Neighbours21BLASTN+1705827.gbk
161775794*179708521292Island text2.2952918.622328.5784Neighbours21BLASTN1775794.gbk
171821913*184109919187Island text2.4343219.228832.0563Neighbours21BLASTN1821913.gbk
181909403*193121021808Island text2.9786119.153332.6471Neighbours21BLASTN+1909403.gbk
192176000221577639777Island text2.283120.027434.8901Neighbours21BLASTN+2176000.gbk
202283074230609123018Island text1.6333218.779329.5523Neighbours21BLASTN2283074.gbk
212327479235034122863Island text2.147720.566334.1428Neighbours323BLASTN2327479.gbk
222364948*238316518218Island text1.5947220.999529.4189Neighbours323BLASTN+2364948.gbk
232519637254251822882Island text1.4895422.02717.9498Neighbours21BLASTN+2519637.gbk
242615814263896623153Island text2.0657920.553431.2096Neighbours323BLASTN+2615814.gbk