Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017272: Thermus thermophilus SG0.5JP17-16 chromosome, complete genome

NCBI: NC_017272

Host Lineage: Thermus thermophilus; Thermus; Thermaceae; Thermales; Deinococcus-Thermus; Bacteria

General Information: Environment: Fresh water, Hot spring; Temp: Thermophile; Temp: 70C; This species is extremely thermophilic and has been useful in analyzing bacterial life and biochemical processes under high temperature as well as being a source of thermophilic enzymes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1607900*63121323314Island text1.7053619.649819.22Neighbours11BLASTN607900.gbk
292119394754926357Island text2.1565618.899627.3781Neighbours11BLASTN+921193.gbk