Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017267: Xanthomonas oryzae pv. oryzicola BLS256 chromosome, complete

NCBI: NC_017267

Host Lineage: Xanthomonas oryzae; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: These organisms are almost exclusively found associated with their plant hosts and are not found free in the soil. Xanthomonas oryzae contains two pathovars which cause enconomically significant diseases in rice. Xanthomonas oryzae pathovar oryzicola causes bacterial streak. This disease is common in tropical area and can cause crop losses of up to 32%. Xanthomonas oryzae pathovar oryzae causes bacterial leaf blight which is one of the most serious diseases of rice. This disease is common in temperate and tropical areas and can cause significant crop loss.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1294615309923639Island text1.6957323.597821.508Neighbours11BLASTN+29461.gbk
21348005137316825164Island text2.6006926.596232.9826Neighbours11BLASTN+1348005.gbk
32326443*235245826016Island text2.566526.219234.8134Neighbours11BLASTN+2326443.gbk
42698944*272646127518Island text1.8118521.930927.3426Neighbours11BLASTN+2698944.gbk
52955946297909923154Island text1.9706725.700732.7514Neighbours11BLASTN+2955946.gbk
63333036335775324718Island text1.9838728.433430.7268Neighbours11BLASTN+3333036.gbk
73612682*363913026449Island text1.6561919.011419.438Neighbours11BLASTN+3612682.gbk
83982619400908126463Island text1.7200322.745622.0508Neighbours11BLASTN+3982619.gbk
94175374419809922726Island text1.6627720.738526.2974Neighbours11BLASTN+4175374.gbk
104232771425230519535Island text1.5671723.85527.5315Neighbours11BLASTN+4232771.gbk