Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017243: Brachyspira intermedia PWS/A chromosome, complete genome

NCBI: NC_017243

Host Lineage: Brachyspira intermedia; Brachyspira; Brachyspiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Porcine origin. Animal pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1580008479426795Island text2.576714.559527.7785Neighbours21BLASTN+58000.gbk
2314000*33623322234Island text1.572817.681825.9581Neighbours21BLASTN+314000.gbk
334914437026721124Island text2.6264313.966720.5405Neighbours21BLASTN349144.gbk
4393749*41718023432Island text1.9201812.369322.3292Neighbours21BLASTN393749.gbk
5424132*44345719326Island text1.7317113.886224.5706Neighbours21BLASTN424132.gbk
649168150959917919Island text1.4960414.372613.607Neighbours21BLASTN491681.gbk
7517684*54010822425Island text1.8120612.548622.7129Neighbours21BLASTN+517684.gbk
855450057446419965Island text1.6087115.468123.8896Neighbours21BLASTN554500.gbk
9599814*62306623253Island text1.5266414.257120.173Neighbours21BLASTN599814.gbk
10685783*70381218030Island text1.9867513.633923.5108Neighbours21BLASTN685783.gbk
11723000*74127718278Island text1.553214.746518.2513Neighbours21BLASTN+723000.gbk
121041917106517523259Island text2.1649715.110221.7168Neighbours21BLASTN1041917.gbk
131197586121610918524Island text1.6420113.682520.8978Neighbours21BLASTN+1197586.gbk
141229597*125722927633Island text2.0774617.273529.2493Neighbours21BLASTN1229597.gbk
151323870*134609922230Island text1.7184113.977422.2317Neighbours21BLASTN1323870.gbk
161499757*151994120185Island text1.6291813.761621.5312Neighbours21BLASTN1499757.gbk
171558000*158098922990Island text1.4670814.834626.3126Neighbours21BLASTN+1558000.gbk
181614157164142327267Island text1.6756413.901415.7693Neighbours21BLASTN+1614157.gbk
191652000167158619587Island text2.1093114.010820.4227Neighbours21BLASTN1652000.gbk
201698000172135323354Island text2.3691313.980623.8405Neighbours21BLASTN1698000.gbk
211734179175310318925Island text1.9382814.328524.0813Neighbours21BLASTN+1734179.gbk
221813158*184418431027Island text2.2119117.746829.7142Neighbours21BLASTN+1813158.gbk
231901898192009918202Island text2.1352812.785726.3674Neighbours21BLASTN1901898.gbk
242048387*206816619780Island text1.5803314.755617.0869Neighbours21BLASTN+2048387.gbk
252079018209895419937Island text1.4742915.807420.374Neighbours21BLASTN+2079018.gbk
262190000224768957690Island text1.7217316.155725.8501Neighbours21BLASTN+2190000.gbk
272383577240501121435Island text1.8072815.843130.5927Neighbours21BLASTN2383577.gbk
282672909*269909926191Island text2.3262717.853926.8267Neighbours21BLASTN+2672909.gbk
292778427*280181523389Island text1.5493514.679614.9135Neighbours21BLASTN+2778427.gbk
302813733283708623354Island text1.5841417.133630.5819Neighbours21BLASTN+2813733.gbk
312857681*289652238842Island text3.1214719.536331.5485Neighbours21BLASTN2857681.gbk
322955597297809922503Island text2.4451812.408821.4277Neighbours21BLASTN2955597.gbk
333093393311625622864Island text1.565318.415632.7994Neighbours21BLASTN+3093393.gbk
343141500317082829329Island text1.8768217.891125.2428Neighbours21BLASTN+3141500.gbk