Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017238: Borrelia afzelii PKo chromosome, complete genome

NCBI: NC_017238

Host Lineage: Borrelia afzelii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This species was isolated from a skin lesion from a Lyme disease patient in Europe in 1993. It is a specific aetological agent of acrodermatitis chronica atrophicans (ACA). This organism can be differentiated from other Borrelia species by monoclonal antibody hybridization.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127298031323640257Island text1.5363915.695228.7585Neighbours21BLASTN272980.gbk
2386893*41376426872Island text1.6678716.604132.5555Neighbours21BLASTN+386893.gbk
3427482*46187834397Island text2.4325320.806138.6746Neighbours21BLASTN427482.gbk
4482222*51115328932Island text1.5906416.340432.0021Neighbours21BLASTN482222.gbk