Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017192: Arcobacter sp. L, complete genome

NCBI: NC_017192

Host Lineage: Arcobacter; Arcobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Nitrogen fixation, Thiosulfate oxidation. Dominates the liquid phase of the microbial fuel cell. Isolated from the anode biofilm of a microbial fuel cell.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120404*4158221179Island text1.6588415.710122.1048Neighbours21BLASTN+20404.gbk
28894011215623217Island text1.8256713.296427.1227Neighbours21BLASTN+88940.gbk
315904717712318077Island text1.6283613.378521.9454Neighbours21BLASTN159047.gbk
427618730131425128Island text1.9343816.399328.8084Neighbours21BLASTN+276187.gbk
5497950*52248524536Island text1.5049715.406125.7218Neighbours21BLASTN497950.gbk
6683493*70742123929Island text1.640314.412125.131Neighbours21BLASTN683493.gbk
771434673435220007Island text1.660316.412322.384Neighbours21BLASTN+714346.gbk
889071891923428517Island text1.5706422.18837.2524Neighbours21BLASTN890718.gbk
91000096*102315723062Island text2.0352716.84328.1758Neighbours21BLASTN+1000096.gbk
101028866105340024535Island text2.4848714.129424.5462Neighbours21BLASTN+1028866.gbk
111063955108571621762Island text1.8222414.756827.0618Neighbours21BLASTN+1063955.gbk
121137724116044322720Island text3.8279719.215127.4399Neighbours21BLASTN1137724.gbk
131745114177058225469Island text1.4797916.646431.033Neighbours21BLASTN+1745114.gbk
141799000*182243423435Island text1.6340618.710229.9704Neighbours21BLASTN1799000.gbk
151841987187885436868Island text1.7425817.716928.6963Neighbours21BLASTN+1841987.gbk
161885457191694331487Island text1.6739514.515420.263Neighbours21BLASTN+1885457.gbk
171933106*195204118936Island text2.2218515.737127.4531Neighbours21BLASTN1933106.gbk
182114433*213316918737Island text1.6019414.079224.0041Neighbours21BLASTN+2114433.gbk
192153461217815724697Island text1.5162814.384721.0622Neighbours21BLASTN+2153461.gbk
202216914224312526212Island text1.5427613.965226.2273Neighbours21BLASTN2216914.gbk
212469667*248875619090Island text2.9407916.004422.4175Neighbours21BLASTN2469667.gbk
222505369252847323105Island text2.416213.542712.3097Neighbours21BLASTN+2505369.gbk
232548933*256880219870Island text5.6444421.26429.7434Neighbours21BLASTN2548933.gbk