Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017191: Bacillus amyloliquefaciens XH7 chromosome, complete genome

NCBI: NC_017191

Host Lineage: Bacillus amyloliquefaciens; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus amyloliquefaciens is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Bacillus amyloliquefaciens is able to degrade myo-inositol hexakisphosphate (phytate), making phosphorus more available to plants. This organism also produces antifungal and antibacterial substances, such as bacillomycin D, surfactin, and bacillaene, which protect the plant from pathogenic organisms. In addition, proteases and amylases produced by Bacillus amyloliquefaciens are used in industrial applications.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1183500*21028726788Island text2.10733.402255.963Neighbours23BLASTN+183500.gbk
242500044574620747Island text2.1141133.145154.3245Neighbours31BLASTN+425000.gbk
3467207*50177134565Island text1.4966732.703143.2726Neighbours21BLASTN+467207.gbk
4641923*66319321271Island text4.2893539.072721.3928Neighbours31BLASTN+641923.gbk
5754453*78210127649Island text1.9112132.777826.4598Neighbours23BLASTN+754453.gbk
61173989*1325052151064Island text2.450337.019115.1138Neighbours21BLASTN+1173989.gbk
71568369160200133633Island text1.8063934.116948.1766Neighbours21BLASTN1568369.gbk
82174741222005645316Island text2.1333332.08819.2252Neighbours21BLASTN+2174741.gbk
92223740224199218253Island text4.3624241.081317.0608Neighbours24BLASTN+2223740.gbk
102514401*253444420044Island text2.0313834.725653.3297Neighbours23BLASTN+2514401.gbk
113483231350575522525Island text3.6561240.061527.4018Neighbours31BLASTN+3483231.gbk
123766960379224425285Island text2.0436134.539718.1192Neighbours23BLASTN+3766960.gbk
133841170*386783026661Island text3.6667239.531718.1492Neighbours23BLASTN3841170.gbk
143901914*392683524922Island text1.7044830.961224.193Neighbours23BLASTN+3901914.gbk