Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017190: Bacillus amyloliquefaciens LL3 chromosome, complete genome

NCBI: NC_017190

Host Lineage: Bacillus amyloliquefaciens; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus amyloliquefaciens is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Bacillus amyloliquefaciens is able to degrade myo-inositol hexakisphosphate (phytate), making phosphorus more available to plants. This organism also produces antifungal and antibacterial substances, such as bacillomycin D, surfactin, and bacillaene, which protect the plant from pathogenic organisms. In addition, proteases and amylases produced by Bacillus amyloliquefaciens are used in industrial applications.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1182449*20917126723Island text1.9925737.518254.8895Neighbours23BLASTN+182449.gbk
242400044444920450Island text1.92134.216956.8005Neighbours31BLASTN+424000.gbk
3466236*49134025105Island text1.4648432.386945.4867Neighbours21BLASTN+466236.gbk
459113962165030512Island text4.2348138.140220.3622Neighbours23BLASTN+591139.gbk
5678089*69789719809Island text1.7747431.949226.2197Neighbours31BLASTN+678089.gbk
6794820*82246727648Island text2.7188935.395613.6475Neighbours23BLASTN+794820.gbk
785217187255720387Island text1.9076937.396652.9937Neighbours24BLASTN+852171.gbk
887135289094519594Island text2.2334635.636727.5799Neighbours24BLASTN+871352.gbk
91196356*122957733222Island text2.0020831.562126.5075Neighbours21BLASTN+1196356.gbk
101465079152628261204Island text4.1476640.104316.2267Neighbours21BLASTN+1465079.gbk
111832402186102128620Island text1.6916931.896921.4597Neighbours21BLASTN1832402.gbk
122002718202909926382Island text1.6349231.435439.0608Neighbours21BLASTN+2002718.gbk
1321306512284599153949Island text1.9140335.572752.9145Neighbours21BLASTN+2130651.gbk
143166000318501219013Island text3.7778638.466720.1651BLASTN+3166000.gbk
153528229354609917871Island text2.6598336.888720.0985Neighbours31BLASTN+3528229.gbk
163812065383737325309Island text1.8599335.098721.4957Neighbours23BLASTN+3812065.gbk
173879148*391327234125Island text1.9578335.474520.1777Neighbours21BLASTN+3879148.gbk