Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017188: Bacillus amyloliquefaciens TA208 chromosome, complete genome

NCBI: NC_017188

Host Lineage: Bacillus amyloliquefaciens; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus amyloliquefaciens is a member of a group of free-living soil bacteria known to promote plant growth and suppress plant pathogens. Bacillus amyloliquefaciens is able to degrade myo-inositol hexakisphosphate (phytate), making phosphorus more available to plants. This organism also produces antifungal and antibacterial substances, such as bacillomycin D, surfactin, and bacillaene, which protect the plant from pathogenic organisms. In addition, proteases and amylases produced by Bacillus amyloliquefaciens are used in industrial applications.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1177500*20437726878Island text2.1059832.903755.5275Neighbours23BLASTN+177500.gbk
241900043971620717Island text2.1139432.630954.5324Neighbours31BLASTN+419000.gbk
3461177*49574934573Island text1.5206232.031243.8421Neighbours21BLASTN461177.gbk
4635901*65717121271Island text4.319338.501221.8544Neighbours31BLASTN+635901.gbk
5753039*78225729219Island text1.8761331.537525.938Neighbours23BLASTN+753039.gbk
61172181*1323475151295Island text2.453336.307515.1725Neighbours21BLASTN+1172181.gbk
71567000160069733698Island text1.7398133.139647.1288Neighbours21BLASTN+1567000.gbk
82172706*221802145316Island text2.1821131.792320.1913Neighbours21BLASTN+2172706.gbk
92221705224359921895Island text4.3389839.966217.3486Neighbours24BLASTN+2221705.gbk
102512357253126618910Island text2.0812436.810653.1441Neighbours23BLASTN2512357.gbk
113482500350409221593Island text3.6609239.61827.3978Neighbours31BLASTN+3482500.gbk
123764061379055226492Island text2.0439134.289317.9747Neighbours23BLASTN+3764061.gbk
133839478*386613826661Island text3.7144638.796518.3395Neighbours23BLASTN3839478.gbk
143900951*392301322063Island text1.7290830.274228.4931Neighbours23BLASTN+3900951.gbk