Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017187: Arcobacter butzleri ED-1, complete genome

NCBI: NC_017187

Host Lineage: Arcobacter butzleri; Arcobacter; Campylobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Arcobacter butzleri is a member of the family Campylobacteraceae, related to the human pathogenic Campylobacter spp. and the environmental Sulfurospirillum spp. butzleri is mainly found in livestock and water/marine environments and can cause gastroenteritis and bacteremia in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110320*3573525416Island text1.8241416.863428.1297Neighbours21BLASTN+10320.gbk
232522934854823320Island text1.51514.208424.8751Neighbours21BLASTN+325229.gbk
338773541095123217Island text1.7042113.907513.339Neighbours21BLASTN387735.gbk
4422698*44442721730Island text1.5694115.950323.2397Neighbours21BLASTN422698.gbk
5500638*52439323756Island text1.576719.872732.1243Neighbours21BLASTN+500638.gbk
664182266898627165Island text1.8437813.94719.0766Neighbours21BLASTN641822.gbk
7691769*71485123083Island text1.4960915.600726.2639Neighbours21BLASTN691769.gbk
8719206*74227123066Island text1.9172316.729129.0383Neighbours21BLASTN719206.gbk
975036376966019298Island text2.6662214.441525.5878Neighbours21BLASTN+750363.gbk
1081494083335318414Island text3.1805115.221722.1342Neighbours21BLASTN814940.gbk
1190687792965822782Island text2.0999214.053422.3657Neighbours21BLASTN+906877.gbk
12937649*95669319045Island text2.486215.52727.5247Neighbours21BLASTN937649.gbk
131305805132906723263Island text1.8205314.465322.3941Neighbours21BLASTN+1305805.gbk
141424371144268518315Island text1.6007215.114327.1653Neighbours21BLASTN+1424371.gbk
151511567*153556223996Island text1.6606514.114225.5451Neighbours21BLASTN+1511567.gbk
161564403158446220060Island text1.5460213.676424.6863Neighbours21BLASTN+1564403.gbk
171580988160091719930Island text1.6065814.156717.3042Neighbours21BLASTN+1580988.gbk
181683619172409940481Island text1.9527513.369413.7045Neighbours21BLASTN1683619.gbk
191757934*178299025057Island text3.4817917.863430.5791Neighbours21BLASTN+1757934.gbk
201832045185028718243Island text1.4781714.902817.1536Neighbours21BLASTN1832045.gbk
211923733*194826624534Island text1.6513715.158924.5147Neighbours21BLASTN1923733.gbk
222037988205693018943Island text2.5565614.387813.3512Neighbours21BLASTN2037988.gbk