Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017167: Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1

NCBI: NC_017167

Host Lineage: Alicyclobacillus acidocaldarius; Alicyclobacillus; Alicyclobacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius was first isolated from an acidic creek in Yellowston National Park and grows at a pH of 3.6. This organism is both thermophilic and acidophilic and produces heat and acid stable enzymes, such as amylase and esterase, which may be important in industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112998816447634489Island text3.0957841.030630.3228Neighbours19BLASTN+129988.gbk
2328752*34798119230Island text2.1376927.526142.3499Neighbours11BLASTN328752.gbk
335106937249421426Island text1.6865427.428830.5442Neighbours11BLASTN+351069.gbk
440735242736520014Island text1.8231327.979133.5668Neighbours11BLASTN+407352.gbk
567451170359929089Island text4.361241.943349.3956Neighbours11BLASTN+674511.gbk
61088713*111559926887Island text3.4836237.609739.7257Neighbours19BLASTN+1088713.gbk
71135137*115527920143Island text1.7230826.97938.2751Neighbours11BLASTN+1135137.gbk
81405626*142818722562Island text1.8390328.310425.5451Neighbours11BLASTN+1405626.gbk
91648913*1794798145886Island text2.2093632.737332.2846Neighbours19BLASTN+1648913.gbk
102203159*222663323475Island text1.6654727.574841.9722Neighbours11BLASTN+2203159.gbk
112259413227781318401Island text1.4675327.881825.0579Neighbours11BLASTN+2259413.gbk
122298962*237709978138Island text2.2419234.555838.6513Neighbours19BLASTN+2298962.gbk
132647655266756819914Island text1.8268428.836328.4891Neighbours11BLASTN+2647655.gbk
142828500284625017751Island text1.8002427.793725.606Neighbours11BLASTN+2828500.gbk
153013947303768123735Island text1.832731.683338.0121Neighbours11BLASTN+3013947.gbk