Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017162: Acinetobacter baumannii 1656-2 chromosome, complete genome

NCBI: NC_017162

Host Lineage: Acinetobacter baumannii; Acinetobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This bacterium is commonly isolated from the hospital environment and hospitalized patients. It is an aquatic organism, and is often cultured from liquid medical samples such as respiratory secretions, wounds, and urine. Acinetobacter also colonizes irrigating solutions and intravenous solutions. Although it has low virulence, it is capable of causing infection. Most isolates recovered from patients represent colonization rather than infection. When infections do occur, they usually occur in the blood, or in organs with a high fluid content, such as the lungs or urinary tract. Infections by this organism are becoming increasingly problematic due to the high number of resistance genes found in clinical isolates. Some strains are now resistant to all known antibiotics. Most of these genes appear to have been transferred horizontally from other organisms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1158289*17836420076Island text2.3476931.324845.5204Neighbours44BLASTN+158289.gbk
227046029509924640Island text1.5329328.347531.8528Neighbours41BLASTN+IslandViewer 270460.gbk
382756785084323277Island text2.198331.694644.1446Neighbours44BLASTN827567.gbk
41228723126431335591Island text2.1860839.873924.0472Neighbours42BLASTN+IslandViewer 1228723.gbk
53817952383781219861Island text2.3702833.23943.1899Neighbours21BLASTNIslandViewer 3817952.gbk