Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017161: Hydrogenobacter thermophilus TK-6 chromosome, complete genome

NCBI: NC_017161

Host Lineage: Hydrogenobacter thermophilus; Hydrogenobacter; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: Isolation: Soil near hot-spring in Izu Peninsula, Japan; Temp: Thermophile; Temp: 70C. Hydrogenobacter thermophilus is a strictly thermophilic, obligately chemolithotrophic, hydrogen-oxidizing bacterium isolated from hot springs.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2748127481Island text2.4388431.818625.9432Neighbours323BLASTN1.gbk
2282500*30972227223Island text1.8116134.004131.4943Neighbours323BLASTN+282500.gbk
350220652556223357Island text1.8201930.299331.4969Neighbours323BLASTN+502206.gbk
4775610*81512939520Island text1.7222827.207643.6696Neighbours323BLASTN+775610.gbk
5810627*84119230566Island text1.7838726.751145.3587Neighbours323BLASTN+810627.gbk
6927290*95611528826Island text1.4943533.761145.1645Neighbours323BLASTN+927290.gbk
71012874105151138638Island text2.6122635.023316.1636Neighbours323BLASTN1012874.gbk
81117741*114016122421Island text1.6076425.068934.3145Neighbours323BLASTN1117741.gbk