Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017150: Acetobacter pasteurianus IFO 3283-01-42C, complete genome

NCBI: NC_017150

Host Lineage: Acetobacter pasteurianus; Acetobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acetobacter pasteurianus is an acetic acid-producing bacterium commonly found associated with plants and plant products. This organism is used in the production of fermented foods, such as kefir, and vinegar. Acetic acid bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116089220657445683Island text1.9327236.475331.1516Neighbours322BLASTN+160892.gbk
225547427430918836Island text1.5892829.03731.435Neighbours322BLASTN+255474.gbk
385370887412820421Island text1.49835.335428.7883BLASTN+853708.gbk
41406793*142759920807Island text1.7043429.925515.9205Neighbours322BLASTN+1406793.gbk
51571450159095819509Island text1.5058628.739135.4672Neighbours322BLASTN+1571450.gbk
61833087186777934693Island text1.7179735.146351.6376Neighbours322BLASTN+1833087.gbk
71877480190125823779Island text1.6213334.929222.1277Neighbours322BLASTN+1877480.gbk
81940000*196349223493Island text1.8563135.063722.9371Neighbours322BLASTN+1940000.gbk
92244950227486929920Island text1.8578236.905721.8646Neighbours322BLASTN+2244950.gbk
102290681233043039750Island text1.8450133.917634.1926Neighbours322BLASTN+2290681.gbk
112383361240243619076Island text2.1894335.657433.4538Neighbours322BLASTN+2383361.gbk
122689920*271349623577Island text1.5234930.439338.1648Neighbours322BLASTN+2689920.gbk