Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017146: Acetobacter pasteurianus IFO 3283-26, complete genome

NCBI: NC_017146

Host Lineage: Acetobacter pasteurianus; Acetobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acetobacter pasteurianus is an acetic acid-producing bacterium commonly found associated with plants and plant products. This organism is used in the production of fermented foods, such as kefir, and vinegar. Acetic acid bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116089220594645055Island text1.8856236.659331.9261Neighbours322BLASTN+160892.gbk
2867500*88809920600Island text1.6293135.185330.0141Neighbours322BLASTN+867500.gbk
31407804*142859920796Island text1.6644130.692416.4718Neighbours322BLASTN+1407804.gbk
41929678194859918922Island text1.6236535.022952.1675Neighbours23BLASTN+1929678.gbk
51972396199617423779Island text1.5058532.605850.673Neighbours322BLASTN+1972396.gbk
62035000*205840823409Island text1.633338.507221.4927Neighbours322BLASTN+2035000.gbk
72339848236976729920Island text1.7559232.408723.4764Neighbours322BLASTN+2339848.gbk
82383509240761624108Island text1.6830237.619622.7561Neighbours322BLASTN+2383509.gbk
92416000243680420805Island text1.7880134.452835.8925Neighbours322BLASTN+2416000.gbk
102476844249678319940Island text1.8320733.001627.8355Neighbours322BLASTN+2476844.gbk
112538483256421025728Island text1.5133129.648831.5198Neighbours322BLASTN+2538483.gbk
122782325*280556423240Island text1.6313131.396728.849Neighbours322BLASTN+2782325.gbk