Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017138: Bacillus megaterium WSH-002 chromosome, complete genome

NCBI: NC_017138

Host Lineage: Bacillus megaterium; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Bacillus megaterium is a naturally occurring soil bacterium, originally named because of its large size in relation to E. coli. This bacterium produces a number of useful enzymes, such as, amylases and proteases which have industrial uses. In addition this organism can be used for the production and export of other economically important compounds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1980696*100315222457Island text2.4941428.797241.1172Neighbours325BLASTN+980696.gbk
21812000*183409922100Island text1.5507721.980436.4577Neighbours21BLASTN+1812000.gbk
32293576231609922524Island text1.6396120.65331.2706Neighbours21BLASTN+2293576.gbk