Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017125: Acetobacter pasteurianus IFO 3283-22, complete genome

NCBI: NC_017125

Host Lineage: Acetobacter pasteurianus; Acetobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acetobacter pasteurianus is an acetic acid-producing bacterium commonly found associated with plants and plant products. This organism is used in the production of fermented foods, such as kefir, and vinegar. Acetic acid bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116089220594645055Island text1.8873436.659331.9261Neighbours322BLASTN+160892.gbk
2867500*88809920600Island text1.631335.185330.0141Neighbours322BLASTN+867500.gbk
31407804*142859920796Island text1.665830.692416.4718Neighbours322BLASTN+1407804.gbk
41929666194859918934Island text1.6241735.022952.1675Neighbours23BLASTN+1929666.gbk
51972384199616223779Island text1.5068332.605850.673Neighbours322BLASTN+1972384.gbk
62035000*205836623367Island text1.6351438.734221.4439Neighbours322BLASTN+2035000.gbk
72339806236972529920Island text1.7526532.31523.5656Neighbours322BLASTN+2339806.gbk
82383467240621322747Island text1.7171937.269522.5789Neighbours322BLASTN+2383467.gbk
92415500243676221263Island text1.8191734.361335.9822Neighbours322BLASTN+2415500.gbk
102476802249674119940Island text1.8334733.063927.4462Neighbours322BLASTN+2476802.gbk
112538441256416825728Island text1.5002529.401829.224Neighbours322BLASTN+2538441.gbk
122782283*280552223240Island text1.6530431.175520.7969Neighbours322BLASTN+2782283.gbk