Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017121: Acetobacter pasteurianus IFO 3283-07, complete genome

NCBI: NC_017121

Host Lineage: Acetobacter pasteurianus; Acetobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acetobacter pasteurianus is an acetic acid-producing bacterium commonly found associated with plants and plant products. This organism is used in the production of fermented foods, such as kefir, and vinegar. Acetic acid bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116089220594645055Island text1.8842136.659331.9261Neighbours322BLASTN+IslandViewer 160892.gbk
2867500*88809920600Island text1.6276635.185330.0141Neighbours322BLASTN+IslandViewer 867500.gbk
31406787*142759920813Island text1.643430.222515.6495Neighbours322BLASTN+IslandViewer 1406787.gbk
41663698168774324046Island text1.4964535.186646.0836Neighbours322BLASTN+1663698.gbk
51925323195459929277Island text1.5047931.894543.4889Neighbours322BLASTN+IslandViewer 1925323.gbk
61969716199349423779Island text1.6759236.296251.7846Neighbours322BLASTN+IslandViewer 1969716.gbk
72032500*205572823229Island text1.5381336.910721.2377Neighbours322BLASTN+IslandViewer 2032500.gbk
82337168236708729920Island text1.7573134.850922.8264Neighbours322BLASTN+IslandViewer 2337168.gbk
92383375240359920225Island text1.8037935.788519.7239Neighbours322BLASTN2383375.gbk
102413000243412421125Island text1.8120334.987636.9489Neighbours322BLASTN+2413000.gbk
112474588249410319516Island text1.8452433.306726.9856Neighbours322BLASTN+IslandViewer 2474588.gbk
122535803255887123069Island text1.5230229.789430.3431Neighbours322BLASTN+2535803.gbk
132781000*280429923300Island text1.680831.3321.6581Neighbours322BLASTN+IslandViewer 2781000.gbk