Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017108: Acetobacter pasteurianus IFO 3283-12, complete genome

NCBI: NC_017108

Host Lineage: Acetobacter pasteurianus; Acetobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acetobacter pasteurianus is an acetic acid-producing bacterium commonly found associated with plants and plant products. This organism is used in the production of fermented foods, such as kefir, and vinegar. Acetic acid bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116089220594645055Island text1.8839736.659331.9261Neighbours322BLASTN+160892.gbk
2867500*88809920600Island text1.6273835.185330.0141Neighbours322BLASTN+867500.gbk
31406787*142759920813Island text1.6431330.222515.6495Neighbours322BLASTN+1406787.gbk
41663698168774324046Island text1.4961835.186646.0836Neighbours322BLASTN+1663698.gbk
51925323195459929277Island text1.5045431.894543.4889Neighbours322BLASTN+1925323.gbk
61969716199349423779Island text1.6753536.296251.7846Neighbours322BLASTN+1969716.gbk
72032500*205572323224Island text1.5378736.910721.2377Neighbours322BLASTN+2032500.gbk
82337163236708229920Island text1.7569434.850922.8264Neighbours322BLASTN+2337163.gbk
92383370240359920230Island text1.8082635.831619.8546Neighbours322BLASTN2383370.gbk
102413000243411921120Island text1.8131835.146237.0608Neighbours322BLASTN+2413000.gbk
112474583249409819516Island text1.8449633.296827.0048Neighbours322BLASTN+2474583.gbk
122535798255886623069Island text1.5196630.019730.3772Neighbours322BLASTN+2535798.gbk
132779303*280287923577Island text1.6777631.277421.4582Neighbours322BLASTN+2779303.gbk