Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017100: Acetobacter pasteurianus IFO 3283-03, complete genome

NCBI: NC_017100

Host Lineage: Acetobacter pasteurianus; Acetobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Acetobacter pasteurianus is an acetic acid-producing bacterium commonly found associated with plants and plant products. This organism is used in the production of fermented foods, such as kefir, and vinegar. Acetic acid bacteria.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116089220594645055Island text1.8876736.659331.9261Neighbours322BLASTN+160892.gbk
2867500*88809920600Island text1.631735.185330.0141Neighbours322BLASTN+867500.gbk
31407804*142859920796Island text1.6661830.692416.4718Neighbours322BLASTN+1407804.gbk
41929672194859918928Island text1.6245835.022952.1675Neighbours23BLASTN+1929672.gbk
51972389199616723779Island text1.5073332.605850.673Neighbours322BLASTN+1972389.gbk
62035000*205838623387Island text1.6380938.610621.3302Neighbours322BLASTN+2035000.gbk
72339826236974529920Island text1.7568732.283123.559Neighbours322BLASTN+2339826.gbk
82383487240759424108Island text1.7012837.560822.5335Neighbours322BLASTN+2383487.gbk
92414075243678222708Island text1.7914534.459736.0666Neighbours322BLASTN+2414075.gbk
102476822249589719076Island text1.8347533.193327.5465Neighbours322BLASTN+2476822.gbk
112538461256418825728Island text1.5152329.591930.6722Neighbours322BLASTN+2538461.gbk
122782303*280554223240Island text1.644431.218120.9117Neighbours322BLASTN+2782303.gbk