Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017098: Spirochaeta africana DSM 8902 chromosome, complete genome

NCBI: NC_017098

Host Lineage: Spirochaeta africana; Spirochaeta; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Alkaline salt lakes, Fresh water; Isolation: Bacterial bloom in the brine; Temp: Mesophile; Temp: 35C; Country:Kenya: Lake Magadi. Spirochaeta africana is an alkaliphilic spriochete found in alkaline environments such as soda lakes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1321965871826523Island text2.1884839.933430.6067BLASTN32196.gbk
247700050190824909Island text2.22841.021434.4017BLASTN+477000.gbk
3652681*68133128651Island text1.6217531.629843.479BLASTN652681.gbk
4840492*86749727006Island text1.6864333.835836.7284Neighbours53BLASTN840492.gbk
587537890190426527Island text2.0797638.250333.4958BLASTN+875378.gbk
6986428*103234545918Island text3.3692444.142325.4757Neighbours322BLASTN+986428.gbk
71149145118995440810Island text3.9351347.989425.5862BLASTN+1149145.gbk
81278712131257833867Island text2.5229947.635825.7671Neighbours332BLASTN+1278712.gbk
91409086142827819193Island text1.6047628.587139.48711409086.gbk
101542284*158842546142Island text3.9272353.659426.2598Neighbours322BLASTN+1542284.gbk
111589994*162137031377Island text2.2165137.393921.3513BLASTN+1589994.gbk
122562131258681524685Island text2.3283535.634452.4907Neighbours54BLASTN+2562131.gbk