Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017095: Fervidobacterium pennivorans DSM 9078 chromosome, complete genome

NCBI: NC_017095

Host Lineage: Fervidobacterium pennivorans; Fervidobacterium; Thermotogaceae; Thermotogales; Thermotogae; Bacteria

General Information: Country: Italy; Environment: Hot spring, Mud, Sediment; Isolation: hot mud of spa; Temp: Thermophile; Temp: 65C. This organism is an extreme thermophilic member of the Thermotogales and has the characteristic morphology of one or more cells contained in a sheath-like envelope which extends beyond the cell wall. This organism produces a protease which is able to degrade keratin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111936115222232862Island text1.4903223.03937.017Neighbours21BLASTN+119361.gbk
2166896*19833031435Island text1.6228822.97739.5818Neighbours21BLASTN+166896.gbk
3269165*28905919895Island text2.8414633.730546.2587BLASTN+269165.gbk
41333810*135613422325Island text1.8839422.397940.5348Neighbours21BLASTN+1333810.gbk
51429298*144720817911Island text2.4121623.04444.8852BLASTN1429298.gbk
61461520*147917017651Island text1.9970422.387241.2261Neighbours21BLASTN+1461520.gbk
71573170159628523116Island text2.0356321.197136.1737Neighbours21BLASTN1573170.gbk
81627686*165324125556Island text2.6445640.585344.7643Neighbours21BLASTN+1627686.gbk
91757935177578117847Island text1.4579223.242927.3176Neighbours21BLASTN+1757935.gbk
101927118*194725320136Island text1.5799922.802240.8728Neighbours21BLASTN+1927118.gbk
112058921*207823819318Island text1.7647722.476943.0259BLASTN2058921.gbk
122143845*216999926155Island text1.8119621.595340.8271Neighbours21BLASTN2143845.gbk