Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017094: Leptospirillum ferrooxidans C2-3, complete genome

NCBI: NC_017094

Host Lineage: Leptospirillum ferrooxidans; Leptospirillum; Nitrospiraceae; Nitrospirales; Nitrospirae; Bacteria

General Information: An obligately chemolithotrophic Gram-negative iron-oxidizing bacterium Leptospirillum ferrooxidans C2-3 belonging to phylum Nitrospirae was isolated from fresh volcanic ash deposit in the island of Miyake, Japan.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1828836*90510376268Island text2.1559734.147327.2065Neighbours36BLASTN828836.gbk
21339311*135754218232Island text1.5125733.373832.0271Neighbours317BLASTN+1339311.gbk
31703000172907726078Island text1.535425.340524.8142Neighbours23BLASTN1703000.gbk