Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017093: Actinoplanes missouriensis 431, complete genome

NCBI: NC_017093

Host Lineage: Actinoplanes missouriensis; Actinoplanes; Micromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces xylose isomerase and glucose isomerase which are of use in the production of high fructose corn syrup. Aerobic, soil-inhabiting, filamentous Gram-positive bacterium that characteristically produces spores within a terminal sporangium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
183526086472029461Island text3.499121.478125.9255Neighbours11BLASTN835260.gbk
21411532143459923068Island text4.243220.000324.8465Neighbours11BLASTN1411532.gbk
32129450215209922650Island text2.102814.8617.0043Neighbours11BLASTN+2129450.gbk
42173684219370820025Island text3.6060520.726725.9429Neighbours112173684.gbk
52357583238091523333Island text1.6329713.788219.9947Neighbours11BLASTN+2357583.gbk
63777178*380274525568Island text1.6308414.536722.761Neighbours11BLASTN+3777178.gbk
75225864525924233379Island text1.5247512.777617.3468Neighbours11BLASTN+5225864.gbk
85410932*542965918728Island text1.8334113.30415.5236Neighbours11BLASTN+5410932.gbk
96461486*648403622551Island text1.7761311.612416.9875Neighbours11BLASTN+6461486.gbk
107234589725453819950Island text3.9475619.997428.4071Neighbours11BLASTN7234589.gbk
117255652728491529264Island text3.1596419.531828.886Neighbours11BLASTN7255652.gbk
128407968843046122494Island text1.7654613.017411.4828Neighbours11BLASTN8407968.gbk
138518961854399625036Island text1.5150215.229812.9431Neighbours11BLASTN+8518961.gbk
148757291*878399926709Island text1.5451218.149615.3779Neighbours11BLASTN8757291.gbk