Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017082: Bradyrhizobium sp. S23321, complete genome

NCBI: NC_017082

Host Lineage: Bradyrhizobium; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Anoxygenic photosynthesis, Carbon fixation, Nitrogen fixation, Thiosulfate oxidation. Oligotrophic bacterium. A model microorganism for non-nodulating soil bradyrhizobia. Isolated from paddy soil at the experimental farm of Tohoku University, Miyagi, Japan in 1992.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
153200059464562646Island text2.1829627.79725.3903Neighbours11BLASTN532000.gbk
22355221237590320683Island text1.5854723.549421.0915Neighbours11BLASTN2355221.gbk
33687638370930921672Island text1.6128322.821924.7868Neighbours11BLASTN+3687638.gbk
43717939374773029792Island text2.0508528.2224.0208Neighbours11BLASTN+3717939.gbk
55789534*582645236919Island text1.963626.934720.3895Neighbours11BLASTN+5789534.gbk
65844708586609921392Island text1.5379520.73241.6585Neighbours11BLASTN+5844708.gbk
75925357*594863923283Island text1.3396222.233724.1503Neighbours11BLASTN+5925357.gbk
86321124634192220799Island text1.5608220.030423.6752Neighbours11BLASTN6321124.gbk
96444522651160967088Island text1.721524.808624.239Neighbours11BLASTN+6444522.gbk
106687020*671005023031Island text2.3750128.238230.8437Neighbours11BLASTN6687020.gbk