Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017080: Phycisphaera mikurensis NBRC 102666, complete genome

NCBI: NC_017080

Host Lineage: Phycisphaera mikurensis; Phycisphaera; Phycisphaeraceae; Phycisphaerales; Planctomycetes; Bacteria

General Information: Gram-negative, spherical, motile and facultatively anaerobic, isolated from a marine alga (Porphyra sp.) collected on Mikura Island, Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1500007356823569Island text1.7363811.338518.6678Neighbours11BLASTN50000.gbk
216618018966623487Island text1.7820913.309618.7854Neighbours11BLASTN166180.gbk
3191906*21616624261Island text2.1034813.747715.6446Neighbours11BLASTN+191906.gbk
457500060004525046Island text1.7464114.038813.512Neighbours11+575000.gbk
5942416*97220329788Island text2.1116216.70214.7791Neighbours11BLASTN+942416.gbk
61194199*121412119923Island text1.5616311.911816.9387Neighbours11BLASTN1194199.gbk
71335407135948924083Island text1.4849812.73120.6724Neighbours11BLASTN+1335407.gbk
81981788200700025213Island text2.1796814.414322.4552Neighbours11BLASTN1981788.gbk
92095706212115025445Island text1.6199713.308612.7299Neighbours11+2095706.gbk
102340880236315822279Island text1.6778512.959819.6042Neighbours11BLASTN2340880.gbk
112379551*240435524805Island text1.6589715.829419.9372Neighbours11BLASTN2379551.gbk
122814629*284089726269Island text2.3871817.884211.8232Neighbours11BLASTN+2814629.gbk
132893224*291807724854Island text1.5720117.663126.8249Neighbours8BLASTN+2893224.gbk
142995001301692821928Island text1.5813115.283514.4222Neighbours11BLASTN+2995001.gbk
153317701333603118331Island text2.0080412.53478.71387Neighbours8BLASTN3317701.gbk
163452121*347231620196Island text1.4908813.442418.0351Neighbours11BLASTN3452121.gbk
173552355357573723383Island text1.5637414.495428.7502Neighbours11BLASTN+3552355.gbk
183712000373023518236Island text1.9974813.175914.1308Neighbours11BLASTN3712000.gbk