Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017079: Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome

NCBI: NC_017079

Host Lineage: Caldilinea aerophila; Caldilinea; Caldilineaceae; Caldilineales; Chloroflexi; Bacteria

General Information: Caldilinea aerophila strain STL-6-O1T was isolated from a sulfur-turf sample in a pH neutral Japanese hot spring. It stains gram-negative and is facultatively aerobic: it grows both aerobically and anaerobically (fermentatively). Optimal growth occurs at 55 degrees C, pH 7.5 - 8.0. It requires yeast extract.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
126173630464842913Island text2.5156337.367538.9023Neighbours11+261736.gbk
2700524*72538424861Island text1.5641727.242430.8569Neighbours11BLASTN+700524.gbk
373283475609923266Island text1.6744829.144425.7691Neighbours11BLASTN+732834.gbk
41084684110705922376Island text1.5420326.719146.827Neighbours11BLASTN+1084684.gbk
51476887150613429248Island text1.8723328.563448.9233Neighbours11BLASTN1476887.gbk
62157733217720719475Island text1.9361632.513834.7969Neighbours11BLASTN+2157733.gbk
72243451226663723187Island text2.0632228.475446.9168Neighbours11BLASTN+2243451.gbk
82634623*266212127499Island text1.5165530.479435.0926Neighbours11BLASTN+2634623.gbk
94550406457109420689Island text1.7789529.287630.8977Neighbours11BLASTN+4550406.gbk
105034500506265028151Island text1.5891633.954224.8378Neighbours11BLASTN5034500.gbk