Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017078: Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1,

NCBI: NC_017078

Host Lineage: Selenomonas ruminantium; Selenomonas; Veillonellaceae; Selenomonadales; Firmicutes; Bacteria

General Information: This organism is a member of the normal flora of the sheep rumen. Nitrogen fixation. The genus Selenomonas constitutes a group of motile crescent-shaped bacteria and includes species living in the gastrointestinal tracts of animals, in particular, the Ruminants. Despite being Firmicutes they stain Gram-negative and possess a double bilayer. Cells are crescent or bean-shaped with coiled flagella located on the concave surface with an infolding of the cell membrane behind the flagellar attachment point.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117984823285753010Island text4.0706735.059417.6782BLASTN+179848.gbk
224704526931222268Island text2.3150631.32720.4653Neighbours23BLASTN+247045.gbk