Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_017065: Rickettsia slovaca str. D-CWPP chromosome, complete genome

NCBI: NC_017065

Host Lineage: Rickettsia slovaca; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Members of this genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, are obligate intracellular pathogens. In both groups, the bacteria are transmitted via an insect, usually a tick, to a host organism where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1131883683323646Island text2.6418212.062328.9012Neighbours21BLASTN+13188.gbk
2175856*19446618611Island text1.4858113.199223.9676Neighbours21BLASTN175856.gbk
3274165*29871424550Island text1.5342115.868225.6121Neighbours21BLASTN+274165.gbk
4930985*95445623472Island text2.1284414.118727.6227Neighbours21BLASTN930985.gbk
51144500*116340618907Island text1.4938614.469826.0629BLASTN1144500.gbk