Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017059: Rhodospirillum photometricum DSM 122, complete genome

NCBI: NC_017059

Host Lineage: Rhodospirillum photometricum; Rhodospirillum; Rhodospirillaceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Anoxygenic photosynthesis, Carbon fixation, Nitrogen fixation. Anoxygenic phototroph.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112359923599Island text2.1855925.046620.5988BLASTN+1.gbk
231564*6621434651Island text5.346843.105525.2581BLASTN31564.gbk
3376226*39784721622Island text1.666723.830721.6987Neighbours11BLASTN+376226.gbk
446910849121022103Island text1.9572332.46824.0434Neighbours11BLASTN+469108.gbk
574762476750719884Island text1.509427.036718.3031Neighbours11BLASTN+747624.gbk
696730999627128963Island text2.0502132.35732.1055Neighbours11BLASTN+967309.gbk
71727095*175046323369Island text1.305424.939225.338Neighbours11BLASTN1727095.gbk
81972895199331120417Island text1.6435725.914431.7054Neighbours11BLASTN+1972895.gbk
92084500210524420745Island text1.6762924.002919.1254Neighbours11BLASTN2084500.gbk
102491924251296421041Island text1.485627.342123.5974Neighbours11BLASTN+2491924.gbk
112739015276423325219Island text1.7851226.775320.6328Neighbours11BLASTN+2739015.gbk
122771085*282483053746Island text2.4764531.478128.1671Neighbours11BLASTN+2771085.gbk
132836000286459928600Island text2.2402127.578121.7383Neighbours11BLASTN+2836000.gbk
142922000294263120632Island text1.7274122.553729.5129Neighbours11BLASTN+2922000.gbk
152957911298373525825Island text2.1098125.449837.4354Neighbours11BLASTN+2957911.gbk
163163319319288729569Island text1.2910622.811325.5208Neighbours11BLASTN+3163319.gbk
173355006337867823673Island text1.6014224.237737.6424Neighbours11BLASTN+3355006.gbk
183404000342759923600Island text2.0127727.427224.7369Neighbours11BLASTN+3404000.gbk
193501252*351954218291Island text1.5019726.489518.5163Neighbours11BLASTN3501252.gbk
203688688370864219955Island text1.7000521.41920.4653Neighbours11BLASTN+3688688.gbk