Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017058: Rickettsia australis str. Cutlack chromosome, complete genome

NCBI: NC_017058

Host Lineage: Rickettsia australis; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Animal pathogen in Mammalia (intracellular obligate). Rickettsiae are obligate intracellular Gram-negative bacteria mostly found in arthropods, some of which cause mild to severe diseases in humans. Rickettsia australis causes a medical condition called Queensland tick typhus. The probable vectors are the tick species, Ixodes holocyclus and Ixodes tasmani. Small marsupials are suspected reservoirs of this bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
197810*12060622797Island text2.7324111.819123.8275Neighbours21BLASTN+97810.gbk
2129474*15622226749Island text2.5065817.47732.6063Neighbours21BLASTN+129474.gbk
3283738*30509921362Island text1.5562412.592720.1973Neighbours21BLASTN283738.gbk
4497500*52097323474Island text2.0620214.574628.2454Neighbours21BLASTN497500.gbk
5671000*69020219203Island text1.8635413.442426.3816Neighbours21BLASTN671000.gbk
6862000*88409922100Island text1.3699515.029226.8851Neighbours21BLASTN+862000.gbk
71152361*117688624526Island text1.7210614.843429.086Neighbours21BLASTN+1152361.gbk
81200500121809917600Island text1.8248411.691424.1442Neighbours21BLASTN+1200500.gbk
91255623*127814922527Island text1.5697714.579626.2454Neighbours21BLASTN1255623.gbk